Practical session
This workshop will explore the essential steps for detecting mosaic chromosomal alterations (mCAs).
Practical Overview:
- Convert GenomeStudio CNV table to VCF
- Perform Phasing using EAGLE2
- Detect mCAs using MoChA on the phased VCF
- plot the identified mCAs
- Utilize Circos to illustrating the distribution of autosomal mCAs categorized as Gain, CNLOH, and Loss
Let’s get started
Please go ahead and open the 08_mCA_colab.ipynb Google colab notebook.